MP-BioPath (Mathmatical Programming Biological Pathways)

Developed by: Adam Wright

Contributors: Thomas Barbazuk

Version v1.0 (Research Edition) - December 28th 2017

Date: April 12 2024

Documentation: April 12 2024

MP-BioPath is a biological pathway tool used to infer the activity of individual pathways. The tool implements a novel approach, using Mathematical Programming, to infer pathway activity. It can read a combination of copy number, mutation, expression level, and proteomic data to make these inferences. The tool uses evidence of biological perturbations to infer the activity of the remaining nodes in the specified pathway.